RNDr. Terezie Mandáková, Ph.D.

terezie.mandakova@ceitec.muni.cz
Phone: 
+420 549 49 7847
Office: 
A26/325

Publications

2024

Kinetochore and ionomic adaptation to whole-genome duplication in Cochlearia shows evolutionary convergence in three autopolyploids
Biased retention of environment-responsive genes following genome fractionation
Uniparental silencing of 5S rRNA genes in plant allopolyploids - insights from Cardamine (Brassicaceae)
Altai Mountains – cradle of hybrids and introgressants: A case study in Veronica subg. Pseudolysimachium (Plantaginaceae)
Ancient hybridization and repetitive element proliferation in the evolutionary history of the monocot genus Amomum (Zingiberaceae)
Injection-based hairy root induction and plant regeneration techniques in Brassicaceae
Drought and life-history strategies in Heliophila (Brassicaceae)
A chromosome-level genome assembly of the amphibious plant Rorippa aquatica reveals its allotetraploid origin and mechanisms of heterophylly upon submergence

2023

Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset
A Hyb-Seq phylogeny of Boechera and related genera using a combination of Angiosperms353 and Brassicaceae-specific bait sets
The meso-octoploid Heliophila variabilis genome sheds a new light on the impact of polyploidization and diploidization on the diversity of the Cape flora
Chromosome Painting Using Chromosome-Specific BAC Clones
Cycles of satellite and transposon evolution in Arabidopsis centromeres
The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
Phylogenomics and genome size evolution in Amomum s. s. (Zingiberaceae): Comparison of traditional and modern sequencing methods

2022

Image analysis workflows to reveal the spatial organization of cell nuclei and chromosomes
Idahoa and Subularia: the hidden polyploid origins of two enigmatic crucifer genera
The identification of the missing maternal genome of the allohexaploid camelina (Camelina sativa)
The evolutionary history of Cardamine bulbifera shows a successful rapid postglacial Eurasian range expansion in the absence of sexual reproduction
Transfer of two Arabidella and two Cuphonotus species to the genus Lemphoria (Brassicaceae) and a description of the new species L. queenslandica
Genome diploidization associates with cladogenesis, trait disparity and plastid gene evolution in a crucifer tribe
Evolution of an apomixis-specific allele class in supernumerary chromatin of apomictic Boechera
Intact rDNA arrays of Potentilla-origin detected in Erythronium nucleus suggest recent eudicot-to-monocot horizontal transfer
Genomes, repeatomes and interphase chromosome organization in the meadowfoam family (Limnanthaceae, Brassicales)
Genetic structure and evolution of diploid Cochlearia in Iceland
Ancient biosyntheses in an oil crop: Glucosinolate profiles in Limnanthes alba and its relatives (Limnanthaceae, Brassicales)
Chloroplast phylogenomics in Camelina (Brassicaceae) reveals multiple origins of polyploid species and the maternal lineage of C. sativa

2021

Genome evolution of the psammophyte Pugionium for desert adaptation and further speciation
Genome structure and evolution in the cruciferous tribe Thlaspideae (Brassicaceae)
The genetic and epigenetic landscape of the Arabidopsis centromeres
Nuclear organization in crucifer genomes: nucleolus-associated telomere clustering is not universal interphase configuration in Brassicaceae
The Best of Both Worlds: Combining Lineage Specific and Universal Bait Sets in Target Enrichment Hybridization Reactions
Allele sorting as a novel approach to resolving the origin of allotetraploids using Hyb-Seq data: a case study of the Balkan mountain endemic Cardamine barbaraeoides
Linked by ancestral bonds: multiple whole-genome duplications and reticulate evolution in a Brassicaceae tribe
Evolution of tandem repeats is mirroring post-polyploid cladogenesis in Heliophila (Brassicaceae)
The chromosome-level genome sequence and karyotypic evolution of Megadenia pygmaea (Brassicaceae)
Gradual evolution of allopolyploidy in Arabidopsis suecica
The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic
Genome structure and apomixis in Phoenicaulis (Brassicaceae; Boechereae)

2020

So close and yet so different: strong contrasts between evolutionary histories of different species of the Cardamine pratensis polyploid complex in Central and southeastern Europe
Chromosomal evolution and apomixis in the cruciferous tribe Boechereae
Genomic blocks in Aethionema arabicum support Arabideae as next diverging clade in Brassicaceae
Genome Evolution in Arabideae was Marked by Frequent Centromere Repositioning

2019

Origin and evolution of diploid and allopolyploid Camelina genomes were accompanied by chromosome shattering
Genome invasion by a hypo-methylated satellite repeat in Australian crucifer Ballantinia antipoda
The large genome size variation in the Hesperis clade was shaped by the prevalent proliferation of DNA repeats and rarer genome downsizing
The story of promiscuous crucifers: origin and genome evolution of an invasive species Cardamine occulta (Brassicaceae) and its relatives
Camelina neglecta (Brassicaceae, Camelineae), a new diploid species from Europe
Healthy roots and leaves: comparative genome structure of horseradish and watercress

2018

The Aquilegia genome: adaptive radiation and an extraordinarily polymorphic chromosome with a unique history
Hybridization-facilitated genome merger and repeated chromosome fusion after eight million years
Morphology and genome size of the widespread weed Cardamine occulta: how it differs from cleistogamic C. kokaiensis and other closely related taxa in Europe and Asia
Taxonomic status and typification of a neglected name Symphytum leonhardtianum from the Symphytum tuberosum complex (Boraginaceae)
Post-polyploid diploidization and diversification through dysploid changes
Phylogeny and systematics of the tribe Thlaspideae (Brassicaceae) and the recognition of two new genera
Small genome separates native and invasive populations in an ecologically important cosmopolitan grass

2017

Multispeed genome diploidization and diversification after an ancient allopolyploidization
Monophyletic origin and evolution of the largest crucifer genomes
Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention
The Mediterranean: the cradle of Anthoxanthum (Poaceae) diploid diversity
Epistatic and allelic interactions control expression of ribosomal RNA gene clusters in Arabidopsis thaliana
Young inversion with multiple linked QTLs under selection in a hybrid zone
Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana

2016

Are B-chromosomes responsible for the extraordinary genome size variation in selected Anthoxanthum annuals?
Painting of Arabidopsis chromosomes with chromosome-specific BAC Clones
Chromosome preparation for cytogenetic analyses in Arabidopsis
Comparative paleogenomics of crucifers: ancestral genomic blocks revisited
Repeated whole-genome duplication, karyotype reshuffling and biased retention of stress-responding genes in Buckler Mustard
Ecological segregation does not drive the intricate parapatric distribution of diploid and tetraploid cytotypes of the Arabidopsis arenosa group (Brassicaceae)

2015

The common ancestral genome of the Brassica species
Genome structure of the heavy metal hyperaccumulator Noccaea caerulescens and its stability on metalliferous and nonmetalliferous soils
Evolutionary and taxonomic implications of variation in nuclear genome size: lesson from the grass genus Anthoxanthum (Poaceae)
Catastrophic chromosomal restructuring during genome elimination in plants
Karyotype evolution in apomictic Boechera and the origin of the aberrant chromosomes
Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

2014

When fathers are instant loosers: homogenisation of rDNA loci in recently formed Cardamine schulzii trigenomic allopolyploid
Multiple hybridization events in Cardamine (Brassicaceae) during the last 150 years: revisiting a textbook example of neoallopolyploidy
Chromatin features of plant telomeric sequences at terminal vs. internal positions
BrassiBase: Introduction to a novel knowledge database on Brassicaceae evolution
Cardamine hirsuta: a versatile genetic system for comparative studies

2013

The Capsella rubella genome and the genomic consequences of rapid mating system evolution
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
Analysis of plant meiotic chromosomes by chromosome painting
The More the Merrier: recent hybridization and polyploidy in Cardamine
Deciphering the diploid ancestral genome of the mesohexaploid Brassica rapa
An atlas of over 90,000 conserved non-coding sequences yields detailed insight into crucifer regulatory regions

2012

Whole-genome triplication and species radiation in the southern African tribe Heliophileae (Brassicaceae)

2011

Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies

2010

Fast diploidization in close mesopolyploid relatives of Arabidopsis
Island species radiation and karyotypic stasis in Pachycladon allopolyploids
Reciprocal and multi-species chromosome BAC painting in crucifers (Brassicaceae)

2009

A bicontinental origin of polyploid Australian/New Zealand Lepidium species (Brassicaceae)? Evidence from genomic in situ hybridization

Appointments and Education

2013 Postdoctoral Researcher, Masaryk University
2006 - 2013 Junior Researcher, Masaryk University
2013 Ph.D., Faculty of Science, Masaryk University, Brno
2006 M.S., Faculty of Science, Charles University, Prague